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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015940171.1_cds_XP_016484486.1_75498
CDS Infomation

[gene=LOC107805029] [db_xref=GeneID:107805029] [protein=probable pectate lyase 5] [protein_id=XP_016484486.1] [location=join(54310..54416,54815..55451,56178..56281,56383..56521,58099..58320)] [gbkey=CDS]
Sequence

ATGGGAATACCAATTATCTTCCTTCTCCTTGTTGCTCTTTTAGCTCCTCTCTTCACATTC
TCAACCCCTGTTCCTGACCCTGAAGTTATAGTCCAAGAAGTTAATGACAAAATTTTCAAT
GCATCAAGAAGGAACTTAGGCTATTTATCATGTGGAACAGGCAACCCTATTGATGATTGC
TGGAGATGTGACCCAAATTGGGAAAAAAACAGGCAAATGTTAGCTGATTGTGCCATTGGA
TTTGGCAAACAAGCCATTGGTGGAAGAGATGGTAAAATTTACATAGTCACTGATACTAGT
GATGATCCTGTAAATCCAAAGCCAGGAACTTTAAGATATGGTGCTATTCAAAATGAACCA
CTTTGGATTATATTTGGTAGAGACATGGTTATTAAGCTAAAAGAAGAGTTAATGCTGAAT
TCATTCAAGACTATTGATGGTAGAGGTGCTAGTGTACACATTGCTGGTGGTCCATGTATT
ACTATACAATATGTTACAAATATTATTATACATGGATTAAATATTCATGATTGTAAACAA
GGAGGAAATGCTTATGTTAGAGATTCACCAGAGCATTATGGTTGGAGGACATTATCAGAT
GGAGATGGAGTTTCTATATTTGGAGGAAGCCATGTTTGGGTTGATCATTGTTCTTTGTCA
AATTGTAGAGATGGCTTGATTGATGCAATTCGTGGATCTACTGCCATTACTATTTCCAAT
AATTACATGACACATCATAATAAGGTAATGCTTTTGGGACATAGTGATTCATTCACTAGG
GACAAGAACATGCAAGTTACCATTGCTTTTAACCATTTTGGAGAAGGGCTTGTACAGAGA
ATGCCAAGATGTAGACATGGATATTTCCATGTGGTGAACAATGACTACACTCATTGGGAG
ATGTATGCAGTTGGGGGAAGTGCTTCTCCAACTATCAACAGCCAAGGCAATAGATTTCTT
GCTCCTAATGATATCTTCAACAAGGAGGTGACAAAACATGAAGATGCACCAGAAAGTGAA
TGGAAGACTTGGAACTGGAGATCTGAAGGAGATTTAATGCTTAATGGAGCTTTCTTTACT
AGGTCTGGTGCTGGAGCTTCTAAAAGTTATGCCAAAGCTTCAAGTTTAAGTGCAAGGCCA
TCTACTTTAGTTAGCTCTATTACCCTCAATGCTGGTGCACTTGGCTGCAAGAAGGGCAAA
AGATGCTGA

Peptide Sequence

PEP ID

XP_016484486.1
PEP Infomation

PREDICTED: probable pectate lyase 5 [Nicotiana tabacum]
Sequence

MGIPIIFLLLVALLAPLFTFSTPVPDPEVIVQEVNDKIFNASRRNLGYLSCGTGNPIDDC
WRCDPNWEKNRQMLADCAIGFGKQAIGGRDGKIYIVTDTSDDPVNPKPGTLRYGAIQNEP
LWIIFGRDMVIKLKEELMLNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGLNIHDCKQ
GGNAYVRDSPEHYGWRTLSDGDGVSIFGGSHVWVDHCSLSNCRDGLIDAIRGSTAITISN
NYMTHHNKVMLLGHSDSFTRDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWE
MYAVGGSASPTINSQGNRFLAPNDIFNKEVTKHEDAPESEWKTWNWRSEGDLMLNGAFFT
RSGAGASKSYAKASSLSARPSTLVSSITLNAGALGCKKGKRC

Transcript Sequence

Gene sequence data has not been registered.